Transcript: GATA3-AS1:6

Basic information

LNCipedia transcript ID: GATA3-AS1:6 
LNCipedia gene ID: GATA3-AS1
RefSeq ID: NR_104336
Location (hg38): chr10:8052243-8053422
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 730 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104336; NR_104336.1
Alternative gene names: ; GATA3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.4967 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA3-AS1:6 yes no no no

Available literature

  1. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  2. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE
  3. Zhang (2013), Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1., J. Allergy Clin. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIN-2:8
4.0 GATA3-AS1:6
4.1 GATA3-AS1:6
5.0 GATA3-AS1:6
5.1 GATA3-AS1:6
5.2 GATA3-AS1:6