Transcript: GATA3-AS1:9

Basic information

LNCipedia transcript ID: GATA3-AS1:9 
HGNC Gene Symbol: GATA3-AS1    
HGNC Full Gene Name: GATA3 antisense RNA 1
Ensembl Gene ID: ENSG00000197308
Ensembl Transcript ID: ENST00000420815
RefSeq ID: NR_104328
Location (hg38): chr10:8050476-8052495
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 650 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420815; ENST00000420815.1; RP11-379F12.7-002; OTTHUMT00000346865.1; NR_104328; ENST00000420815.5; NR_104328.1
Alternative gene names: ENSG00000197308; RP11-379F12.7; ENSG00000197308.4; OTTHUMG00000156966.1; GATA3-AS1; ENSG00000197308.8; ; ENSG00000197308.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.9791 non-coding 
CPAT coding probability 30.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA3-AS1:9 yes no no no

Available literature

  1. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  2. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE
  3. Zhang (2013), Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1., J. Allergy Clin. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIN-1:7
3.1 lnc-KIN-2:7
4.0 GATA3-AS1:9
4.1 GATA3-AS1:9
5.0 GATA3-AS1:9
5.1 GATA3-AS1:9
5.2 GATA3-AS1:9