Transcript: GAU1:4

Basic information

LNCipedia transcript ID: GAU1:4 
HGNC Gene Symbol: GAU1    
HGNC Full Gene Name: GALNT8 antisense upstream 1
Ensembl Gene ID: ENSG00000255474
Ensembl Transcript ID: ENST00000527518
RefSeq ID: NR_110112
Location (hg38): chr12:4700417-4720102
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1249 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000527518; ENST00000527518.1; RP11-234B24.2-001; OTTHUMT00000388276.1; NONHSAT025973; NR_110112; NR_110112.1
Alternative gene names: ENSG00000255474; RP11-234B24.2; ENSG00000255474.1; OTTHUMG00000166187.1; AC005833.2; LOC101929549; AC005833.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.5117 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAU1:4 yes no no no

Available literature

  1. Chai (2018), Dynamic chromosomal tuning of a novel GAU1 lncing driver at chr12p13.32 accelerates tumorigenesis., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKAP3-1:1
3.1 lnc-AKAP3-1:1
4.0 lnc-AKAP3-1:1
4.1 lnc-AKAP3-1:1
5.0 lnc-AKAP3-1:1
5.1 GAU1:2
5.2 GAU1:4