Transcript: GAU1:5

Basic information

LNCipedia transcript ID: GAU1:5 
LNCipedia gene ID: GAU1
Location (hg38): chr12:4700441-4704082
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1509 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020685; NONHSAT025974
Alternative gene names: XLOC_009990; linc-AKAP3-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.1653 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAU1:5 yes no no no

Available literature

  1. Chai (2018), Dynamic chromosomal tuning of a novel GAU1 lncing driver at chr12p13.32 accelerates tumorigenesis., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKAP3-1:2
3.1 lnc-AKAP3-1:2
4.0 lnc-AKAP3-1:2
4.1 lnc-AKAP3-1:2
5.0 lnc-AKAP3-1:2
5.1 GAU1:3
5.2 GAU1:5