Transcript: GHRLOS:13

Basic information

LNCipedia transcript ID: GHRLOS:13 
HGNC Gene Symbol: GHRLOS    
HGNC Full Gene Name: ghrelin opposite strand/antisense RNA
Ensembl Gene ID: ENSG00000240288
Ensembl Transcript ID: ENST00000603771
Location (hg38): chr3:10287978-10292580
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 642 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147227; ENST00000603771.1
Alternative gene names: ENSG00000240288.3; GHRLOS; ENSG00000240288.7; NCRNA00068; GHRL-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.7243 non-coding 
CPAT coding probability 3.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GHRLOS:13 no no no no

Available literature

  1. Seim (2008), Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene., BMC Mol. Biol.
  2. Seim (2007), Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TATDN2-1:13
4.0 GHRLOS:13
4.1 GHRLOS:13
5.0 GHRLOS:13
5.1 GHRLOS:13
5.2 GHRLOS:13