Transcript: GMDS-DT:121

Basic information

LNCipedia transcript ID: GMDS-DT:121 
HGNC Gene Symbol: GMDS-DT    
HGNC Full Gene Name: GMDS divergent transcript
Ensembl Gene ID: ENSG00000250903
Ensembl Transcript ID: ENST00000505870
Location (hg38): chr6:2391546-2413591
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8217 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505870; TCONS_00011251; ENST00000505870.1; RP1-80B9.2-003; OTTHUMT00000389170.1; NONHSAT106656; ENST00000505870.5
Alternative gene names: ENSG00000250903; XLOC_005127; linc-WRNIP1-2; RP1-80B9.2; ENSG00000250903.2; OTTHUMG00000014120.3; ENSG00000250903.4; GMDS-AS1; ENSG00000250903.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.0188 non-coding 
CPAT coding probability 40.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
GMDS-DT:121 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRNIP1-2:23
3.1 lnc-WRNIP1-2:23
4.0 GMDS-AS1:28
4.1 GMDS-AS1:28
5.0 GMDS-AS1:28
5.1 GMDS-DT:51
5.2 GMDS-DT:121