Transcript: GMDS-DT:129

Basic information

LNCipedia transcript ID: GMDS-DT:129 
LNCipedia gene ID: GMDS-DT
Location (hg38): chr6:2398575-2413548
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1438 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000532564; ENST00000532564.1; RP1-80B9.2-004; OTTHUMT00000389171.1
Alternative gene names: ENSG00000250903; RP1-80B9.2; ENSG00000250903.2; OTTHUMG00000014120.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9097 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GMDS-DT:129 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRNIP1-2:30
3.1 lnc-WRNIP1-2:30
4.0 GMDS-AS1:36
4.1 GMDS-AS1:36
5.0 GMDS-AS1:36
5.1 GMDS-DT:59
5.2 GMDS-DT:129