Transcript: GMDS-DT:135

Basic information

LNCipedia transcript ID: GMDS-DT:135 
LNCipedia gene ID: GMDS-DT
Location (hg38): chr6:2398982-2480985
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 208 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012394
Alternative gene names: XLOC_005127; linc-WRNIP1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.199 non-coding 
CPAT coding probability 3.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GMDS-DT:135 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRNIP1-2:33
3.1 lnc-WRNIP1-2:33
4.0 GMDS-AS1:42
4.1 GMDS-AS1:42
5.0 GMDS-AS1:42
5.1 GMDS-DT:65
5.2 GMDS-DT:135