Transcript: GPC5-AS1:3

Basic information

LNCipedia transcript ID: GPC5-AS1:3 
LNCipedia gene ID: GPC5-AS1
RefSeq ID: NR_049775
Location (hg38): chr13:92701390-92719974
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 378 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_049775; NR_049775.1
Alternative gene names: ; GPC5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.8176 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPC5-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCT-4:3
4.0 GPC5-AS1:3
4.1 GPC5-AS1:3
5.0 GPC5-AS1:3
5.1 GPC5-AS1:3
5.2 GPC5-AS1:3