Transcript: GPR158-AS1:1

Basic information

LNCipedia transcript ID: GPR158-AS1:1 
HGNC Gene Symbol: GPR158-AS1    
HGNC Full Gene Name: GPR158 antisense RNA 1
Ensembl Gene ID: ENSG00000233642
Ensembl Transcript ID: ENST00000449643
RefSeq ID: NR_027333
Location (hg38): chr10:25158072-25176276
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2433 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000449643; ENST00000449643.1; RP11-80K21.1-001; OTTHUMT00000047246.1; NONHSAT011801; NR_027333; NR_027333.1
Alternative gene names: ENSG00000233642; RP11-80K21.1; ENSG00000233642.1; OTTHUMG00000017830.1; GPR158-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 469.7624 coding 
CPAT coding probability 70.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
GPR158-AS1:1 yes no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ENKUR-1:1
3.1 lnc-ENKUR-1:1
4.0 GPR158-AS1:1
4.1 GPR158-AS1:1
5.0 GPR158-AS1:1
5.1 GPR158-AS1:1
5.2 GPR158-AS1:1