Transcript: GPRC5D-AS1:27

Basic information

LNCipedia transcript ID: GPRC5D-AS1:27 
LNCipedia gene ID: GPRC5D-AS1
Location (hg38): chr12:12927734-12952750
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247498.5|ENST00000540198.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.195 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPRC5D-AS1:27 no no no no

Available literature

  1. Jin (2017), Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk., Environ. Mol. Mutagen.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GPRC5A-2:16
5.0 lnc-GPRC5A-2:16
5.1 GPRC5D-AS1:7
5.2 GPRC5D-AS1:27