Transcript: GPRC5D-AS1:32

Basic information

LNCipedia transcript ID: GPRC5D-AS1:32 
LNCipedia gene ID: GPRC5D-AS1
Location (hg38): chr12:12927758-12980375
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000543515.1; RP11-392P7.8-005; OTTHUMT00000400998.1
Alternative gene names: ENSG00000247498.2; RP11-392P7.8; OTTHUMG00000168718.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.6144 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPRC5D-AS1:32 no no no no

Available literature

  1. Jin (2017), Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk., Environ. Mol. Mutagen.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPRC5A-2:3
4.0 lnc-GPRC5A-2:3
4.1 lnc-GPRC5A-2:3
5.0 lnc-GPRC5A-2:3
5.1 GPRC5D-AS1:13
5.2 GPRC5D-AS1:32