Transcript: GPRC5D-AS1:38

Basic information

LNCipedia transcript ID: GPRC5D-AS1:38 
LNCipedia gene ID: GPRC5D-AS1
Location (hg38): chr12:12980630-12983441
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2500 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000500905
Alternative gene names: ENSG00000247498


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.5847 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPRC5D-AS1:38 no no no no

Available literature

  1. Jin (2017), Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk., Environ. Mol. Mutagen.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1467-2:2
3.1 lnc-GPRC5A-2:10
4.0 lnc-GPRC5A-2:10
4.1 lnc-GPRC5A-2:10
5.0 lnc-GPRC5A-2:10
5.1 GPRC5D-AS1:24
5.2 GPRC5D-AS1:38