Transcript: GRIK1-AS1:1

Basic information

LNCipedia transcript ID: GRIK1-AS1:1 
HGNC Gene Symbol: GRIK1-AS1    
HGNC Full Gene Name: GRIK1 antisense RNA 1
Ensembl Gene ID: ENSG00000174680
Ensembl Transcript ID: ENST00000455392
Location (hg38): chr21:29748175-29763680
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 767 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455392.2; GRIK1-AS1-002; OTTHUMT00000182264.1; ENST00000455392.6
Alternative gene names: ENSG00000174680.5; GRIK1-AS1; OTTHUMG00000081875.1; ENSG00000174680.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2685 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GRIK1-AS1:1 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-2:1
4.0 GRIK1-AS1:1
4.1 GRIK1-AS1:1
5.0 GRIK1-AS1:1
5.1 GRIK1-AS1:1
5.2 GRIK1-AS1:1