Transcript: GRIK1-AS1:2

Basic information

LNCipedia transcript ID: GRIK1-AS1:2 
LNCipedia gene ID: GRIK1-AS1
RefSeq ID: NR_027021
Location (hg38): chr21:29748175-29764006
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1093 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081648; NR_027021; NR_027021.1
Alternative gene names: ; GRIK1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2685 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GRIK1-AS1:2 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-2:6
4.0 GRIK1-AS1:2
4.1 GRIK1-AS1:2
5.0 GRIK1-AS1:2
5.1 GRIK1-AS1:2
5.2 GRIK1-AS1:2