Transcript: GRIK1-AS1:5

Basic information

LNCipedia transcript ID: GRIK1-AS1:5 
HGNC Gene Symbol: GRIK1-AS1    
HGNC Full Gene Name: GRIK1 antisense RNA 1
Ensembl Gene ID: ENSG00000174680
Ensembl Transcript ID: ENST00000423221
Location (hg38): chr21:29748947-29764002
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 624 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423221.1; GRIK1-AS1-003; OTTHUMT00000182265.1; ENST00000423221.5
Alternative gene names: ENSG00000174680.5; GRIK1-AS1; OTTHUMG00000081875.1; ENSG00000174680.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2685 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GRIK1-AS1:5 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-2:3
4.0 GRIK1-AS1:5
4.1 GRIK1-AS1:5
5.0 GRIK1-AS1:5
5.1 GRIK1-AS1:5
5.2 GRIK1-AS1:5