Transcript: GSEC:12

Basic information

LNCipedia transcript ID: GSEC:12 
LNCipedia gene ID: GSEC
Location (hg38): chr11:126340958-126355536
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1460 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000501321
Alternative gene names: ENSG00000247445; AP001318.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.1544 non-coding 
CPAT coding probability 6.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:12 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-712L6.5.1-1:2
3.1 lnc-RP11-712L6.5.1-2:2
4.0 lnc-RP11-712L6.5.1-2:2
4.1 lnc-RP11-712L6.5.1-2:2
5.0 lnc-RP11-712L6.5.1-2:2
5.1 GSEC:7
5.2 GSEC:12