Transcript: GSEC:5

Basic information

LNCipedia transcript ID: GSEC:5 
LNCipedia gene ID: GSEC
RefSeq ID: NR_033839
Location (hg38): chr11:126341716-126355587
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 753 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033839.1
Alternative gene names: ST3GAL4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.4002 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSEC:5 yes no no no

Available literature

  1. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 GSEC:5
5.1 GSEC:5
5.2 GSEC:5