Transcript: GSN-AS1:2

Basic information

LNCipedia transcript ID: GSN-AS1:2 
LNCipedia gene ID: GSN-AS1
Ensembl Gene ID: ENSG00000239593
Ensembl Transcript ID: ENST00000437135
Location (hg38): chr9:121279863-121282730
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 838 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437135.1; RP11-477J21.6-001; OTTHUMT00000053876.1; NONHSAT134545
Alternative gene names: ENSG00000239593.1; RP11-477J21.6; OTTHUMG00000020588.1; MOST2; AL513122.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.2362 non-coding 
CPAT coding probability 23.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GSN-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STOM-2:2
4.0 GSN-AS1:2
4.1 GSN-AS1:2
5.0 GSN-AS1:2
5.1 GSN-AS1:2
5.2 GSN-AS1:2