Transcript: H1FX-AS1:11

Basic information

LNCipedia transcript ID: H1FX-AS1:11 
LNCipedia gene ID: H1FX-AS1
Location (hg38): chr3:129318194-129323499
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 362 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000537780.1; H1FX-AS1-201
Alternative gene names: ENSG00000206417.4; H1FX-AS1; OTTHUMG00000159459.4; FLJ34151


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0051 non-coding 
CPAT coding probability 29.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
H1FX-AS1:11 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf37-1:4
4.0 H1FX-AS1:11
4.1 H1FX-AS1:11
5.0 H1FX-AS1:11
5.1 H1FX-AS1:11
5.2 H1FX-AS1:11