Transcript: H1FX-AS1:3

Basic information

LNCipedia transcript ID: H1FX-AS1:3 
LNCipedia gene ID: H1FX-AS1
RefSeq ID: NR_026991
Location (hg38): chr3:129316271-129324569
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2193 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT092022; NR_026991; NR_026991.1
Alternative gene names: FLJ34151; H1FX-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0051 non-coding 
CPAT coding probability 27.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
H1FX-AS1:3 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf37-1:6
4.0 H1FX-AS1:3
4.1 H1FX-AS1:3
5.0 H1FX-AS1:3
5.1 H1FX-AS1:3
5.2 H1FX-AS1:3