Transcript: H1FX-AS1:9

Basic information

LNCipedia transcript ID: H1FX-AS1:9 
HGNC Gene Symbol: H1FX-AS1    
HGNC Full Gene Name: H1FX antisense RNA 1
Ensembl Gene ID: ENSG00000206417
Ensembl Transcript ID: ENST00000383461
Location (hg38): chr3:129318106-129326225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2600 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000383461.2; H1FX-AS1-001; OTTHUMT00000355523.2; NONHSAT147252; ENST00000383461.6
Alternative gene names: ENSG00000206417.4; H1FX-AS1; OTTHUMG00000159459.4; ENSG00000206417.8; FLJ34151


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8633 non-coding 
CPAT coding probability 36.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
H1FX-AS1:9 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf37-1:3
4.0 H1FX-AS1:9
4.1 H1FX-AS1:9
5.0 H1FX-AS1:9
5.1 H1FX-AS1:9
5.2 H1FX-AS1:9