Transcript: HAGLR:1
Basic information
LNCipedia transcript ID: HAGLR:1
LNCipedia gene ID: HAGLR
Location (hg38): chr2:176176456-176188958
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000413969; ENST00000413969.1; HOXD-AS1-005; OTTHUMT00000334221.1; ENST00000413969.5
Alternative gene names: ENSG00000224189; AC009336.23; ENSG00000224189.2; HOXD-AS1; OTTHUMG00000154172.2; ENSG00000224189.6; HAGLR; Mdgt
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Available literature
- Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
- Li (2014), starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data., Nucleic Acids Res.
- Yarmishyn (2014), HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome., BMC Genomics
- Batagov (2013), Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells., BMC Syst Biol
- Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-AC009336.1-2:1 |
| 3.1 | lnc-AC009336.1-2:1 |
| 4.0 | HAGLR:1 |
| 4.1 | HAGLR:1 |
| 5.0 | HAGLR:1 |
| 5.1 | HAGLR:1 |
| 5.2 | HAGLR:1 |