Transcript: HAGLR:3

Basic information

LNCipedia transcript ID: HAGLR:3 
LNCipedia gene ID: HAGLR
RefSeq ID: NR_033979
Location (hg38): chr2:176173189-176188958
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3812 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033979; NR_033979.2
Alternative gene names: Mdgt; HAGLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.1911 non-coding 
CPAT coding probability 4.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAGLR:3 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  2. Li (2014), starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data., Nucleic Acids Res.
  3. Yarmishyn (2014), HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome., BMC Genomics
  4. Batagov (2013), Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells., BMC Syst Biol
  5. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009336.1-2:13
4.0 HAGLR:3
4.1 HAGLR:3
5.0 HAGLR:3
5.1 HAGLR:3
5.2 HAGLR:3