Transcript: HAGLR:8

Basic information

LNCipedia transcript ID: HAGLR:8 
LNCipedia gene ID: HAGLR
Location (hg38): chr2:176175994-176188540
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 984 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000417086; ENST00000417086.1; HOXD-AS1-003; OTTHUMT00000334219.1; ENST00000417086.5
Alternative gene names: ENSG00000224189; AC009336.23; ENSG00000224189.2; HOXD-AS1; OTTHUMG00000154172.2; ENSG00000224189.6; HAGLR; Mdgt


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.5683 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAGLR:8 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  2. Li (2014), starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data., Nucleic Acids Res.
  3. Yarmishyn (2014), HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome., BMC Genomics
  4. Batagov (2013), Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells., BMC Syst Biol
  5. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009336.1-2:2
3.1 lnc-AC009336.1-2:2
4.0 HAGLR:8
4.1 HAGLR:8
5.0 HAGLR:8
5.1 HAGLR:8
5.2 HAGLR:8