Transcript: HAGLROS:2

Basic information

LNCipedia transcript ID: HAGLROS:2 
LNCipedia gene ID: HAGLROS
Location (hg38): chr2:176177717-176179009
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1122 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000426615; ENST00000426615.2; AC009336.24-001; OTTHUMT00000334247.2
Alternative gene names: ENSG00000226363; AC009336.24; ENSG00000226363.2; OTTHUMG00000154176.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.2154 non-coding 
CPAT coding probability 24.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAGLROS:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXD3-1:1
3.1 lnc-HOXD3-1:1
4.0 HAGLROS:2
4.1 HAGLROS:2
5.0 HAGLROS:2
5.1 HAGLROS:2
5.2 HAGLROS:2