Transcript: HAND2-AS1:32

Basic information

LNCipedia transcript ID: HAND2-AS1:32 
LNCipedia gene ID: HAND2-AS1
Location (hg38): chr4:173530475-173584636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 352 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000512209.1; RP11-471J12.1-021; OTTHUMT00000362318.1
Alternative gene names: ENSG00000237125.3; RP11-471J12.1; OTTHUMG00000160783.5; DEIN; NBLA00301; FLJ11539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.2884 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAND2-AS1:32 no no no no

Available literature

  1. Yang (2017), Recurrently deregulated lncRNAs in hepatocellular carcinoma., Nat Commun
  2. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  3. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  4. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  5. Voth (2009), Co-regulated expression of HAND2 and DEIN by a bidirectional promoter with asymmetrical activity in neuroblastoma., BMC Mol. Biol.
  6. Voth (2007), Identification of DEIN, a novel gene with high expression levels in stage IVS neuroblastoma., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-5:30
4.0 HAND2-AS1:32
4.1 HAND2-AS1:32
5.0 HAND2-AS1:32
5.1 HAND2-AS1:32
5.2 HAND2-AS1:32