Transcript: HAO2-IT1:1

Basic information

LNCipedia transcript ID: HAO2-IT1:1 
HGNC Gene Symbol: HAO2-IT1    
HGNC Full Gene Name: HAO2 intronic transcript 1
Ensembl Gene ID: ENSG00000230921
Ensembl Transcript ID: ENST00000419144
RefSeq ID: NR_046780
Location (hg38): chr1:119368946-119370331
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 311 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419144.1; HAO2-IT1-001; OTTHUMT00000034988.1; NONHSAT005564; NR_046780.1
Alternative gene names: ENSG00000230921.1; HAO2-IT1; OTTHUMG00000012520.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.7268 non-coding 
CPAT coding probability 13.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAO2-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSD3B2-2:1
4.0 HAO2-IT1:1
4.1 HAO2-IT1:1
5.0 HAO2-IT1:1
5.1 HAO2-IT1:1
5.2 HAO2-IT1:1