Transcript: HAR1A:2

Basic information

LNCipedia transcript ID: HAR1A:2 
HGNC Gene Symbol: HAR1A    
HGNC Full Gene Name: highly accelerated region 1A
Ensembl Gene ID: ENSG00000225978
Ensembl Transcript ID: ENST00000433161
Location (hg38): chr20:63102205-63104386
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1882 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433161; ENST00000433161.1; HAR1A-001; OTTHUMT00000276287.1
Alternative gene names: ENSG00000225978; HAR1A; ENSG00000225978.1; OTTHUMG00000140136.1; ENSG00000225978.2; ENSG00000225978.3; HAR1F; NCRNA00064; LINC00064


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.5469 non-coding 
CPAT coding probability 28.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAR1A:2 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Gumireddy (2013), Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step., EMBO J.
  3. Qureshi (2012), Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease., Nat. Rev. Neurosci.
  4. Johnson (2010), Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease., Physiol. Genomics
  5. Beniaminov (2008), Distinctive structures between chimpanzee and human in a brain noncoding RNA., RNA
  6. Pollard (2006), An RNA gene expressed during cortical development evolved rapidly in humans., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BIRC7-2:2
3.1 lnc-BIRC7-2:2
4.0 HAR1A:2
4.1 HAR1A:2
5.0 HAR1A:2
5.1 HAR1A:2
5.2 HAR1A:2