Transcript: HAR1A:3

Basic information

LNCipedia transcript ID: HAR1A:3 
LNCipedia gene ID: HAR1A
Location (hg38): chr20:63102894-63104375
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1150 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028262; NONHSAT080829
Alternative gene names: XLOC_013607; linc-BIRC7-3; HAR1F; NCRNA00064; LINC00064


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.5469 non-coding 
CPAT coding probability 32.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAR1A:3 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Gumireddy (2013), Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step., EMBO J.
  3. Qureshi (2012), Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease., Nat. Rev. Neurosci.
  4. Johnson (2010), Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease., Physiol. Genomics
  5. Beniaminov (2008), Distinctive structures between chimpanzee and human in a brain noncoding RNA., RNA
  6. Pollard (2006), An RNA gene expressed during cortical development evolved rapidly in humans., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BIRC7-2:3
3.1 lnc-BIRC7-2:3
4.0 HAR1A:3
4.1 HAR1A:3
5.0 HAR1A:3
5.1 HAR1A:3
5.2 HAR1A:3