Transcript: HAR1B:2

Basic information

LNCipedia transcript ID: HAR1B:2 
HGNC Gene Symbol: HAR1B    
HGNC Full Gene Name: highly accelerated region 1B
Ensembl Gene ID: ENSG00000231133
Ensembl Transcript ID: ENST00000447910
RefSeq ID: NR_003245
Location (hg38): chr20:63095493-63102319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 896 bp
Exons: 2
Sources: Broad Institute; long non-coding rna db - lncrnadb.com; Ensembl release 83 - Dec 2015; Ensembl release 75 - Feb 2014; NONCODE v4; Refseq - Dec 2014; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_003245; TCONS_00027855; NR_003245.1; ENST00000447910.2; NONHSAT080827
Alternative gene names: XLOC_013841; linc-BHLHE23-3; ENSG00000231133.2; HAR1B; ENSG00000231133.6; HAR1R; NCRNA00065; LINC00065


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.5539 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAR1B:2 no no no no

Available literature

  1. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  3. Johnson (2010), Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease., Physiol. Genomics
  4. Beniaminov (2008), Distinctive structures between chimpanzee and human in a brain noncoding RNA., RNA
  5. Pollard (2006), An RNA gene expressed during cortical development evolved rapidly in humans., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BHLHE23-2:1
3.1 lnc-BHLHE23-2:1
4.0 HAR1B:2
4.1 HAR1B:2
5.0 HAR1B:2
5.1 HAR1B:2
5.2 HAR1B:2