Transcript: HAR1B:3

Basic information

LNCipedia transcript ID: HAR1B:3 
HGNC Gene Symbol: HAR1B    
HGNC Full Gene Name: highly accelerated region 1B
Ensembl Gene ID: ENSG00000231133
Ensembl Transcript ID: ENST00000608031
Location (hg38): chr20:63095493-63102319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 773 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608031.1; ENST00000608031.5
Alternative gene names: ENSG00000231133.2; HAR1B; ENSG00000231133.6; HAR1R; NCRNA00065; LINC00065


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.0077 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAR1B:3 no no no no

Available literature

  1. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  3. Johnson (2010), Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease., Physiol. Genomics
  4. Beniaminov (2008), Distinctive structures between chimpanzee and human in a brain noncoding RNA., RNA
  5. Pollard (2006), An RNA gene expressed during cortical development evolved rapidly in humans., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BHLHE23-2:4
4.0 HAR1B:3
4.1 HAR1B:3
5.0 HAR1B:3
5.1 HAR1B:3
5.2 HAR1B:3