Transcript: HAS2-AS1:10

Basic information

LNCipedia transcript ID: HAS2-AS1:10 
LNCipedia gene ID: HAS2-AS1
Location (hg38): chr8:121639346-121644481
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 806 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248690.2|FTMT23100044957.1
Alternative gene names: HASNT; NCRNA00077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -41.9844 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAS2-AS1:10 no no no no

Available literature

  1. Zhu (2017), Long noncoding RNA HAS2-AS1 mediates hypoxia-induced invasiveness of oral squamous cell carcinoma., Mol. Carcinog.
  2. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HAS2-AS1:10
5.0 HAS2-AS1:10
5.1 HAS2-AS1:10
5.2 HAS2-AS1:10