Transcript: HAS2-AS1:6

Basic information

LNCipedia transcript ID: HAS2-AS1:6 
HGNC Gene Symbol: HAS2-AS1    
HGNC Full Gene Name: HAS2 antisense RNA 1
Ensembl Gene ID: ENSG00000248690
Ensembl Transcript ID: ENST00000520043
Location (hg38): chr8:121641436-121644693
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520043; ENST00000520043.1; HAS2-AS1-003; OTTHUMT00000381216.1; NONHSAT128469
Alternative gene names: ENSG00000248690; AC104233.1; ENSG00000248690.2; HAS2-AS1; OTTHUMG00000164965.2; ENSG00000248690.6; HASNT; NCRNA00077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.1194 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HAS2-AS1:6 no no no no

Available literature

  1. Zhu (2017), Long noncoding RNA HAS2-AS1 mediates hypoxia-induced invasiveness of oral squamous cell carcinoma., Mol. Carcinog.
  2. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-785H20.1.1-2:4
3.1 lnc-RP11-785H20.1.1-2:4
4.0 HAS2-AS1:6
4.1 HAS2-AS1:6
5.0 HAS2-AS1:6
5.1 HAS2-AS1:6
5.2 HAS2-AS1:6