Transcript: HCCAT5:3

Basic information

LNCipedia transcript ID: HCCAT5:3 
LNCipedia gene ID: HCCAT5
Location (hg38): chr16:73092349-73093773
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1078 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_027756
Alternative gene names: HTA; FJ222407


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.8145 non-coding 
CPAT coding probability 8.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCCAT5:3 yes no no no

Available literature

  1. Liu (2013), Molecular clone and functional study of a novel hepatoma associated gene., Int. J. Oncol.
  2. Liu (2010), Identification of HTA as a novel-specific marker for human hepatocellular carcinoma., J. Cancer Res. Clin. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-44L9.1.1-10:3
4.0 HCCAT5:3
4.1 HCCAT5:3
5.0 HCCAT5:3
5.1 HCCAT5:3
5.2 HCCAT5:3