Transcript: HCCAT5:4

Basic information

LNCipedia transcript ID: HCCAT5:4 
HGNC Gene Symbol: HCCAT5    
HGNC Full Gene Name: hepatocellular carcinoma associated transcript 5
Ensembl Gene ID: ENSG00000260880
Ensembl Transcript ID: ENST00000642127
Location (hg38): chr16:73092690-73099337
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1029 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642127.1
Alternative gene names: ENSG00000260880.3; HCCAT5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.8145 non-coding 
CPAT coding probability 16.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCCAT5:4 yes no no no

Available literature

  1. Liu (2013), Molecular clone and functional study of a novel hepatoma associated gene., Int. J. Oncol.
  2. Liu (2010), Identification of HTA as a novel-specific marker for human hepatocellular carcinoma., J. Cancer Res. Clin. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 HCCAT5:4
5.1 HCCAT5:4
5.2 HCCAT5:4