Transcript: HCFC1-AS1:1

Basic information

LNCipedia transcript ID: HCFC1-AS1:1 
LNCipedia gene ID: HCFC1-AS1
RefSeq ID: NR_046608
Location (hg38): chrX:153968765-153970091
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 786 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046608; NR_046608.2
Alternative gene names: ; HCFC1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -268.4669 non-coding 
CPAT coding probability 11.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCFC1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM187-1:2
4.0 HCFC1-AS1:1
4.1 HCFC1-AS1:1
5.0 HCFC1-AS1:1
5.1 HCFC1-AS1:1
5.2 HCFC1-AS1:1