Transcript: HCG11:10

Basic information

LNCipedia transcript ID: HCG11:10 
HGNC Gene Symbol: HCG11    
HGNC Full Gene Name: HLA complex group 11
Ensembl Gene ID: ENSG00000228223
Ensembl Transcript ID: ENST00000411553
Location (hg38): chr6:26521709-26527404
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5696 bp
Exons: 1
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411553.3
Alternative gene names: ENSG00000228223.3; HCG11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 151.4641 coding 
CPAT coding probability 16.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG11:10 no no no no

Available literature

  1. Xu (2017), Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction., Int. J. Oncol.
  2. Zhang (2016), Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer., Biomed. Pharmacother.
  3. Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 HCG11:10
5.1 HCG11:10
5.2 HCG11:10