Transcript: HCG11:2

Basic information

LNCipedia transcript ID: HCG11:2 
LNCipedia gene ID: HCG11
Location (hg38): chr6:26521706-26527384
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5679 bp
Exons: 1
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026790
Alternative gene names: bK14H9.3; FLJ14049; FLJ30357

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 151.4641 coding 
CPAT coding probability 24.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG11:2 no no no no

Available literature

  1. Xu (2017), Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction., Int. J. Oncol.
  2. Zhang (2016), Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer., Biomed. Pharmacother.
  3. Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BTN1A1-2:3
4.0 HCG11:2
4.1 HCG11:2
5.0 HCG11:2
5.1 HCG11:2
5.2 HCG11:2