Transcript: HCG11:3

Basic information

LNCipedia transcript ID: HCG11:3 
LNCipedia gene ID: HCG11
Location (hg38): chr6:26521848-26526579
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4732 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000411553; ENST00000411553.1; HCG11-001; OTTHUMT00000040121.1
Alternative gene names: ENSG00000228223; CTA-14H9.3; ENSG00000228223.1; HCG11; OTTHUMG00000014456.1; bK14H9.3; FLJ14049; FLJ30357

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 151.4641 coding 
CPAT coding probability 25.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG11:3 no no no no

Available literature

  1. Xu (2017), Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction., Int. J. Oncol.
  2. Zhang (2016), Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer., Biomed. Pharmacother.
  3. Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTN1A1-2:1
3.1 lnc-BTN1A1-2:1
4.0 HCG11:3
4.1 HCG11:3
5.0 HCG11:3
5.1 HCG11:3
5.2 HCG11:3