Transcript: HCG11:6

Basic information

LNCipedia transcript ID: HCG11:6 
LNCipedia gene ID: HCG11
Location (hg38): chr6:26527063-26527404
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000567732.1; CTA-14H9.5-001; OTTHUMT00000431258.1; NONHSAT108291
Alternative gene names: ENSG00000261353.1; CTA-14H9.5; OTTHUMG00000175905.1; bK14H9.3; FLJ14049; FLJ30357


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5513 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG11:6 no no no no

Available literature

  1. Xu (2017), Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction., Int. J. Oncol.
  2. Zhang (2016), Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer., Biomed. Pharmacother.
  3. Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGN4-1:1
4.0 HCG11:6
4.1 HCG11:6
5.0 HCG11:6
5.1 HCG11:6
5.2 HCG11:6