Transcript: HCG14:1

Basic information

LNCipedia transcript ID: HCG14:1 
HGNC Gene Symbol: HCG14    
HGNC Full Gene Name: HLA complex group 14
Ensembl Gene ID: ENSG00000224157
Ensembl Transcript ID: ENST00000444986
Location (hg38): chr6:28896530-28897322
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011278; ENST00000444986.1; HCG14-001; OTTHUMT00000076613.1; NONHSAT108490
Alternative gene names: XLOC_005225; linc-LOC100129636-2; ENSG00000224157.1; HCG14; OTTHUMG00000031281.1; dJ111M5.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.6635 non-coding 
CPAT coding probability 7.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG14:1 no no no no

Available literature

  1. Santin (2018), A Celiac Diasease Associated lncRNA Named HCG14 Regulates NOD1 Expression in Intestinal Cells., J. Pediatr. Gastroenterol. Nutr.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf100-1:1
3.1 lnc-C6orf100-10:1
4.0 HCG14:1
4.1 HCG14:1
5.0 HCG14:1
5.1 HCG14:1
5.2 HCG14:1