Transcript: HCG14:2

Basic information

LNCipedia transcript ID: HCG14:2 
LNCipedia gene ID: HCG14
RefSeq ID: NR_104117
Location (hg38): chr6:28896530-28897320
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104117; NR_104117.1
Alternative gene names: dJ111M5.4; HCG14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.6635 non-coding 
CPAT coding probability 7.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG14:2 no no no no

Available literature

  1. Santin (2018), A Celiac Diasease Associated lncRNA Named HCG14 Regulates NOD1 Expression in Intestinal Cells., J. Pediatr. Gastroenterol. Nutr.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf100-10:2
4.0 HCG14:2
4.1 HCG14:2
5.0 HCG14:2
5.1 HCG14:2
5.2 HCG14:2