Transcript: HCG14:4

Basic information

LNCipedia transcript ID: HCG14:4 
LNCipedia gene ID: HCG14
Location (hg38): chr6:28896593-28897757
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224157.1|ENCT00000370705.1
Alternative gene names: dJ111M5.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -149.8831 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG14:4 no no no no

Available literature

  1. Santin (2018), A Celiac Diasease Associated lncRNA Named HCG14 Regulates NOD1 Expression in Intestinal Cells., J. Pediatr. Gastroenterol. Nutr.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HCG14:4
5.0 HCG14:4
5.1 HCG14:4
5.2 HCG14:4