Transcript: HCG26:1

Basic information

LNCipedia transcript ID: HCG26:1 
LNCipedia gene ID: HCG26
Location (hg38): chr6:31471229-31472407
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1179 bp
Exons: 1
Sources: Broad Institute
Alternative transcript names: TCONS_00011117
Alternative gene names: XLOC_005247; linc-MICB; bPG181B23.4; bCX205D4.4; NCRNA00191


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.3188 non-coding 
CPAT coding probability 21.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG26:1 no no no no

Available literature

  1. Xu (2014), Histone acetyltransferase inhibitor II induces apoptosis in glioma cell lines via the p53 signaling pathway., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MICB-1:1
3.1 lnc-MICB-1:1
4.0 HCG26:1
4.1 HCG26:1
5.0 HCG26:1
5.1 HCG26:1
5.2 HCG26:1