Transcript: HCG27:1

Basic information

LNCipedia transcript ID: HCG27:1 
LNCipedia gene ID: HCG27
Location (hg38): chr6:31197760-31203967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1719 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00011116
Alternative gene names: XLOC_005244; linc-MICA-2; bPG299F13.9; bCX101P6.9; bQB115I13.2; FLJ40123


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5314 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG27:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF19-1:1
3.1 lnc-TCF19-1:2
4.0 HCG27:1
4.1 HCG27:1
5.0 HCG27:1
5.1 HCG27:1
5.2 HCG27:1