Transcript: HCG27:3

Basic information

LNCipedia transcript ID: HCG27:3 
HGNC Gene Symbol: HCG27    
HGNC Full Gene Name: HLA complex group 27
Ensembl Gene ID: ENSG00000206344
Ensembl Transcript ID: ENST00000424675
Location (hg38): chr6:31198138-31203222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 895 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011287; ENST00000424675; ENST00000424675.1
Alternative gene names: XLOC_005244; linc-MICA-2; ENSG00000206344; HCG27; bPG299F13.9; bCX101P6.9; bQB115I13.2; FLJ40123; ENSG00000206344.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4187 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG27:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF19-1:3
3.1 lnc-TCF19-1:3
4.0 HCG27:3
4.1 HCG27:3
5.0 HCG27:3
5.1 HCG27:3
5.2 HCG27:3