Transcript: HCG27:9

Basic information

LNCipedia transcript ID: HCG27:9 
HGNC Gene Symbol: HCG27    
HGNC Full Gene Name: HLA complex group 27
Ensembl Gene ID: ENSG00000206344
Ensembl Transcript ID: ENST00000415276
Location (hg38): chr6:31202013-31203015
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415276.2
Alternative gene names: ENSG00000206344.7; HCG27


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.4187 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG27:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 HCG27:9
5.1 HCG27:9
5.2 HCG27:9