Transcript: HCG9:2

Basic information

LNCipedia transcript ID: HCG9:2 
HGNC Gene Symbol: HCG9    
HGNC Full Gene Name: HLA complex group 9
Ensembl Gene ID: ENSG00000204625
Ensembl Transcript ID: ENST00000376800
Location (hg38): chr6:29975112-29978410
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000376800.7
Alternative gene names: ENSG00000204625.10; HCG9; PERB11; HCGIX; HCGIX4; HCGIX-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.5089 non-coding 
CPAT coding probability 16.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG9:2 no no no no

Available literature

  1. Hampe (1999), A 356-Kb sequence of the subtelomeric part of the MHC Class I region., DNA Seq.
  2. Shiina (1999), Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 HCG9:2
4.1 HCG9:2
5.0 HCG9:2
5.1 HCG9:2
5.2 HCG9:2