Transcript: HCG9:3

Basic information

LNCipedia transcript ID: HCG9:3 
LNCipedia gene ID: HCG9
Location (hg38): chr6:29975115-29978400
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 650 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_028032
Alternative gene names: PERB11; HCGIX; HCGIX4; HCGIX-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.5089 non-coding 
CPAT coding probability 16.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG9:3 no no no no

Available literature

  1. Hampe (1999), A 356-Kb sequence of the subtelomeric part of the MHC Class I region., DNA Seq.
  2. Shiina (1999), Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-A-1:3
4.0 HCG9:3
4.1 HCG9:3
5.0 HCG9:3
5.1 HCG9:3
5.2 HCG9:3